About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5542361_5556422_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5542361 - 5556422
Intron Length:
14062

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACACT
5'SS Class:
strong_major
3'SS Sequence:
AATTCTGTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
GTTTCTCTAATT
Flanking Amino Acid:
NSSEEFLNDPVNYFIKNGTE
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
77.8
36.9
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
76.6
0.6
1
69.9
40.5
Minor 5ss
41.4
-1
3
58.6
45.7
Minor BPS
69.1
0.68
1.6
85.4
34.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009692
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034804
5465146 - 5682914
217769
ENSAPLT00000024623
5493072 - 5682914
189843
ENSAPLT00000012448
5517801 - 5682914
165114
ENSAPLT00000048092
5493072 - 5682914
189843
ENSAPLT00000010095
5490734 - 5682914
192181
ENSAPLT00000043043
5517801 - 5682914
165114