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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_55483000_55566427_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
55483000 - 55566427
Intron Length:
83428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCTTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCAAT
U12 Branch Point Sequence:
CTGTTCTTCATA
Flanking Amino Acid:
IKKNRIDISSGSGLNDGQWH
Intron Amino Acid Position:
421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
71.8
0.54
1.2
79
32.5
Major PPT
76.7
0.6
0.8
72.3
32.5
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
56.8
0.21
1.8
65.88
41.7

Associated Gene:

Gene:
CNTNAP2
Ensembl Gene ID:
ENSAPLG00000010463
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010897
54975304 - 55769750
794447