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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_55566693_55574673_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55566693 - 55574673
Intron Length:
7981

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGAACA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAC
U12 Branch Point Sequence:
TTTTGCTTACGT
Flanking Amino Acid:
KRKKLEPSNVGNLSFSCVEP
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
0.9
72.2
32.1
Major BPS
68.8
0.47
1.2
63.4
44
Major PPT
73.4
0.53
0.9
73.6
36
Minor 5ss
28.5
-2.5
2.7
29.8
36.4
Minor BPS
56.1
0.27
2.3
83.33
44.1

Associated Gene:

Gene:
CNTNAP2
Ensembl Gene ID:
ENSAPLG00000010463
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010897
54975304 - 55769750
794447