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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_55578185_55579860_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
55578185 - 55579860
Intron Length:
1676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATATTTT
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTATTCTTATTT
Flanking Amino Acid:
KAKLVLNLNLGSNQLGSIYG
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
82.9
29.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
80.5
0.69
0.8
78.8
33.7
Minor 5ss
55.6
0.19
2.5
75.5
40.6
Minor BPS
63
0.49
1.6
75.9
41.4

Associated Gene:

Gene:
CNTNAP2
Ensembl Gene ID:
ENSAPLG00000010463
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010897
54975304 - 55769750
794447