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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_55580065_55621015_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
55580065 - 55621015
Intron Length:
40951

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
TTTTGTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAA
U12 Branch Point Sequence:
TAATCACTAATC
Flanking Amino Acid:
LRIEVYGCSYWADVINFDGH
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.1
81.2
33.5
Major BPS
71.2
0.53
1
72.3
32.8
Major PPT
86.8
0.83
0.7
85.5
29.2
Minor 5ss
49
-0.1
2.8
77.2
37.5
Minor BPS
53
0.07
1.9
66.99
37.9

Associated Gene:

Gene:
CNTNAP2
Ensembl Gene ID:
ENSAPLG00000010463
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010897
54975304 - 55769750
794447