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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_55621164_55736641_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55621164 - 55736641
Intron Length:
115478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCCCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATAGATTTAATA
Flanking Amino Acid:
KPYHQDGNIWAFPGNTNSDS
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.8
38.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
81.6
0.71
0.6
81.5
23.6
Minor 5ss
39.7
-1.2
3.1
51.1
45.2
Minor BPS
55.3
0.16
1.6
63.28
37.2

Associated Gene:

Gene:
CNTNAP2
Ensembl Gene ID:
ENSAPLG00000010463
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010897
54975304 - 55769750
794447