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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5570450_5574376_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5570450 - 5574376
Intron Length:
3927

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TACTTTCTACCA
Flanking Amino Acid:
AMEMLKKEQEALAAKGIDSM
Intron Amino Acid Position:
445

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
86.1
0.81
0.6
85.1
22.4
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
47.5
-0.1
1.9
60.14
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009692
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010095
5490734 - 5682914
192181
ENSAPLT00000043043
5517801 - 5682914
165114
ENSAPLT00000034804
5465146 - 5682914
217769
ENSAPLT00000024623
5493072 - 5682914
189843
ENSAPLT00000012448
5517801 - 5682914
165114
ENSAPLT00000048092
5493072 - 5682914
189843