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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5574557_5576987_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
5574557 - 5576987
Intron Length:
2431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCCAT
5'SS Class:
strong_major
3'SS Sequence:
CGGGGGTTTCTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATGTTAT
U12 Branch Point Sequence:
TTTTCCTTTCCG
Flanking Amino Acid:
CEYDDGQRRMTLLGISYGPN
Intron Amino Acid Position:
505

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
70.6
41.3
Major BPS
72.5
0.56
1.2
63.4
44
Major PPT
57.5
0.17
1
46.1
45.8
Minor 5ss
39.7
-1.2
3.2
53.4
44.8
Minor BPS
47.6
-0.3
3.7
75.67
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009692
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034804
5465146 - 5682914
217769
ENSAPLT00000024623
5493072 - 5682914
189843
ENSAPLT00000010095
5490734 - 5682914
192181
ENSAPLT00000048092
5493072 - 5682914
189843
ENSAPLT00000043043
5517801 - 5682914
165114