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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5574557_5585361_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5574557 - 5585361
Intron Length:
10805

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCCAT
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTCATTTCAACA
Flanking Amino Acid:
CEYDDGQRRMTSPSDEASKK
Intron Amino Acid Position:
505

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
70.6
41.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
77.2
0.61
0.9
73.4
35.7
Minor 5ss
39.7
-1.2
3.2
53.4
44.8
Minor BPS
57.3
0.22
1.6
67.56
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009692
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012448
5517801 - 5682914
165114