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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5577390_5585361_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5577390 - 5585361
Intron Length:
7972

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTCATTTCAACA
Flanking Amino Acid:
IMEKPGTGDLTSPSDEASKK
Intron Amino Acid Position:
639

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
82.3
30
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
77.2
0.61
0.9
73.4
35.7
Minor 5ss
33.1
-1.9
2.7
40.7
39.2
Minor BPS
57.3
0.22
1.6
67.56
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009692
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034804
5465146 - 5682914
217769
ENSAPLT00000024623
5493072 - 5682914
189843
ENSAPLT00000010095
5490734 - 5682914
192181
ENSAPLT00000048092
5493072 - 5682914
189843
ENSAPLT00000043043
5517801 - 5682914
165114