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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5614707_5628681_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5614707 - 5628681
Intron Length:
13975

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCAAT
5'SS Class:
strong_major
3'SS Sequence:
GGATTATTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
AGAAAATAAACC
Flanking Amino Acid:
EQSTFTEMEQQEKQLQLRGQ
Intron Amino Acid Position:
963

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
77.9
38.6
Major BPS
62
0.3
1
62.3
30.4
Major PPT
72.7
0.51
1
62.5
47.4
Minor 5ss
39.7
-1.2
3.2
56.4
48
Minor BPS
42.3
-0.6
2
50.09
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009692
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043043
5517801 - 5682914
165114
ENSAPLT00000034804
5465146 - 5682914
217769
ENSAPLT00000012448
5517801 - 5682914
165114