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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5614707_5635267_F

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
5614707 - 5635267
Intron Length:
20561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTGACAACAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TTTTCCTCATCT
Flanking Amino Acid:
EQSTFTEMEQLDEISLSEGS
Intron Amino Acid Position:
1097

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
77.9
38.6
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
50.1
0
1.2
47.9
43.5
Minor 5ss
39.7
-1.2
3.2
56.4
48
Minor BPS
72.1
0.77
1.8
92.57
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009692
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024623
5493072 - 5682914
189843