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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_56321336_56321428_R

Intron Information:

Intron Rank:
140012
Intron Class:
major
Intron Phase:
Intron Coordinates:
56321336 - 56321428
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGCAGA
5'SS Class:
major
3'SS Sequence:
TATGTTTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATGTTTTTAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
66.7
40.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74.4
0.55
1.1
74.8
38.8
Minor 5ss
39.4
-1.2
2.7
48.6
47.2
Minor BPS
61.4
0.22
1.5
62.24
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022713
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041639
56319995 - 56321671
1677