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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_56383586_56385980_F

Intron Information:

Intron Rank:
126210
Intron Class:
major
Intron Phase:
Intron Coordinates:
56383586 - 56385980
Intron Length:
2395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TATTCCCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TATTCCCTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
1
80.8
34.4
Major BPS
75.1
0.62
1
65.6
41
Major PPT
83.9
0.76
0.8
77.2
31.2
Minor 5ss
46.2
-0.4
2.8
62.9
41.8
Minor BPS
62.5
0.39
2
77.67
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017985
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047541
56343302 - 56386062
42761
ENSAPLT00000040600
56342884 - 56386062
43179