About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_56386085_56391140_F

Intron Information:

Intron Rank:
133278
Intron Class:
major
Intron Phase:
Intron Coordinates:
56386085 - 56391140
Intron Length:
5056

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
ATTTTTTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.9
84.4
33.5
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
85.4
0.8
0.7
80.5
24.8
Minor 5ss
37.9
-1.4
2.7
44.7
42.7
Minor BPS
81.8
1
0.9
85.09
27.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021665
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043969
56386083 - 56405827
19745