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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_56401042_56405811_F

Intron Information:

Intron Rank:
133280
Intron Class:
major
Intron Phase:
Intron Coordinates:
56401042 - 56405811
Intron Length:
4770

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATAACA
5'SS Class:
strong_major
3'SS Sequence:
TCATTTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TCTAAATTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
76.3
32.4
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
83.6
0.76
0.8
81.6
34.5
Minor 5ss
33.8
-1.8
2.8
42
44.2
Minor BPS
50.4
0.09
1.9
72.71
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021665
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043969
56386083 - 56405827
19745