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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5648074_5663262_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5648074 - 5663262
Intron Length:
15189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCCATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TGTGTCTCCATT
Flanking Amino Acid:
WCWLDFLIVDVSLISLIANT
Intron Amino Acid Position:
1295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1
80.9
31.3
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
77.2
0.61
0.9
74.4
35.4
Minor 5ss
39.4
-1.2
2.7
51.9
37.5
Minor BPS
46.9
-0.1
2
68.05
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009692
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034804
5465146 - 5682914
217769
ENSAPLT00000024623
5493072 - 5682914
189843
ENSAPLT00000012448
5517801 - 5682914
165114
ENSAPLT00000048092
5493072 - 5682914
189843
ENSAPLT00000010095
5490734 - 5682914
192181
ENSAPLT00000043043
5517801 - 5682914
165114