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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_56610733_56668524_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56610733 - 56668524
Intron Length:
57792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTACGGTAC
5'SS Class:
major
3'SS Sequence:
ATTTATCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TTTATCTTACAG
Flanking Amino Acid:
FTPLDCLLPAGNLKFCLLIL
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
61.5
40
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
84
0.76
0.8
77.3
36.1
Minor 5ss
36.4
-1.5
3.5
49.8
46.9
Minor BPS
54.4
0
1.8
64.95
42.7

Associated Gene:

Gene:
TPK1
Ensembl Gene ID:
ENSAPLG00000002852
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019322
56610690 - 56924039
313350