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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5663386_5668933_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5663386 - 5668933
Intron Length:
5548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAGTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCACCTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCCCTTTTCACC
Flanking Amino Acid:
RALSRFEGMRVVVNALVGAI
Intron Amino Acid Position:
1336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
75.2
35.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
68.8
0.42
1
72.9
30.8
Minor 5ss
33.6
-1.9
3.5
39
46.2
Minor BPS
49.3
-0
1.7
58.25
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009692
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024623
5493072 - 5682914
189843
ENSAPLT00000012448
5517801 - 5682914
165114
ENSAPLT00000048092
5493072 - 5682914
189843
ENSAPLT00000010095
5490734 - 5682914
192181
ENSAPLT00000043043
5517801 - 5682914
165114
ENSAPLT00000034804
5465146 - 5682914
217769