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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_56668600_56733915_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56668600 - 56733915
Intron Length:
65316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAATA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCACTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TGTTTCTTCACT
Flanking Amino Acid:
KGHFHCLWSKAALRACVDGG
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
82.7
29.3
Major BPS
77.3
0.68
1
81.5
27
Major PPT
83.7
0.76
0.8
77.7
29.8
Minor 5ss
37.1
-1.5
3
49.4
46.4
Minor BPS
72.3
0.78
1.7
88.23
36.9

Associated Gene:

Gene:
TPK1
Ensembl Gene ID:
ENSAPLG00000002852
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019322
56610690 - 56924039
313350
ENSAPLT00000002899
56639031 - 56924039
285009
ENSAPLT00000037214
56668446 - 56924039
255594