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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5669216_5675777_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5669216 - 5675777
Intron Length:
6562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
GGTTTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATATGCTTAATT
Flanking Amino Acid:
GAGYLALLQVATFKGWMDIM
Intron Amino Acid Position:
1430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
77.9
36.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
84.1
0.77
0.8
81
36.6
Minor 5ss
36.4
-1.5
3.3
46.1
43.6
Minor BPS
69.8
0.7
1.7
83.26
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009692
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034804
5465146 - 5682914
217769
ENSAPLT00000024623
5493072 - 5682914
189843
ENSAPLT00000012448
5517801 - 5682914
165114
ENSAPLT00000048092
5493072 - 5682914
189843
ENSAPLT00000010095
5490734 - 5682914
192181
ENSAPLT00000043043
5517801 - 5682914
165114