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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_56733986_56737009_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56733986 - 56737009
Intron Length:
3024

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTAA
5'SS Class:
strong_major
3'SS Sequence:
GCTTGATTCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TTTGGCTTGATT
Flanking Amino Acid:
YITSQKEARKVTPEMSFCCS
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
72.9
34.5
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
73.3
0.52
0.9
69.3
40.8
Minor 5ss
49.2
-0
2.5
63.9
47.7
Minor BPS
62.2
0.47
1.9
82.57
39.6

Associated Gene:

Gene:
TPK1
Ensembl Gene ID:
ENSAPLG00000002852
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018857
56709905 - 56924039
214135