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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_56733986_56765402_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56733986 - 56765402
Intron Length:
31417

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTAA
5'SS Class:
strong_major
3'SS Sequence:
GCTTACCTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTTGCTTACCT
Flanking Amino Acid:
LYHITEGSQESFLPDYISGD
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
72.9
34.5
Major BPS
100
1.24
0.5
100
0
Major PPT
78.1
0.63
0.9
73.7
36.6
Minor 5ss
49.2
-0
2.5
63.9
47.7
Minor BPS
63.5
0.5
2.1
84.57
42.1

Associated Gene:

Gene:
TPK1
Ensembl Gene ID:
ENSAPLG00000002852
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037214
56668446 - 56924039
255594
ENSAPLT00000019322
56610690 - 56924039
313350
ENSAPLT00000002899
56639031 - 56924039
285009