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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5675832_5677729_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5675832 - 5677729
Intron Length:
1898

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTCAT
U12 Branch Point Sequence:
TCTCGTGTCATT
Flanking Amino Acid:
IMYAAVDSRECEEQPEWECN
Intron Amino Acid Position:
1448

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
1
72.3
39.5
Major BPS
67.1
0.42
1.4
71.4
45.1
Major PPT
92.2
0.95
0.6
88.1
21.7
Minor 5ss
33.1
-1.9
3.2
43.3
44.4
Minor BPS
39.3
-0.7
2.5
59.98
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009692
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010095
5490734 - 5682914
192181
ENSAPLT00000043043
5517801 - 5682914
165114
ENSAPLT00000034804
5465146 - 5682914
217769
ENSAPLT00000024623
5493072 - 5682914
189843
ENSAPLT00000012448
5517801 - 5682914
165114
ENSAPLT00000048092
5493072 - 5682914
189843