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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_56765476_56770394_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56765476 - 56770394
Intron Length:
4919

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTAA
5'SS Class:
strong_major
3'SS Sequence:
TTATTCTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCAGCTTTACTT
Flanking Amino Acid:
SLKSRSTTRPSLSFASLACQ
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
82.6
24.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.4
0.82
0.7
81.6
30.1
Minor 5ss
38.9
-1.3
2.9
49
47.2
Minor BPS
53.2
0.18
1.7
67.65
44.2

Associated Gene:

Gene:
TPK1
Ensembl Gene ID:
ENSAPLG00000002852
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018857
56709905 - 56924039
214135