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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_56765476_56802735_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56765476 - 56802735
Intron Length:
37260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTAA
5'SS Class:
strong_major
3'SS Sequence:
GCTTCTTCACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGCTTCTTCACT
Flanking Amino Acid:
PEVKEYYKAKGCELIETMDQ
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
82.6
24.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
69.5
0.44
0.9
63.2
38.3
Minor 5ss
38.9
-1.3
2.9
49
47.2
Minor BPS
65.3
0.56
1.8
79.89
42.3

Associated Gene:

Gene:
TPK1
Ensembl Gene ID:
ENSAPLG00000002852
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037214
56668446 - 56924039
255594
ENSAPLT00000019322
56610690 - 56924039
313350
ENSAPLT00000002899
56639031 - 56924039
285009