About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_56802832_56818997_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56802832 - 56818997
Intron Length:
16166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGCA
5'SS Class:
major
3'SS Sequence:
TTTTATCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTGTTTTATCT
Flanking Amino Acid:
QKKIEEKSLQIDIIVTLGGL
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69.1
35.5
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
91.2
0.93
0.7
89.2
27.3
Minor 5ss
28.9
-2.4
3.5
38.8
46.5
Minor BPS
64
0.52
1.7
82.72
39.3

Associated Gene:

Gene:
TPK1
Ensembl Gene ID:
ENSAPLG00000002852
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037214
56668446 - 56924039
255594
ENSAPLT00000019322
56610690 - 56924039
313350
ENSAPLT00000018857
56709905 - 56924039
214135
ENSAPLT00000002899
56639031 - 56924039
285009