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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_56926595_56927304_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56926595 - 56927304
Intron Length:
710

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCGG
5'SS Class:
major
3'SS Sequence:
TCTGTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTAAAT
U12 Branch Point Sequence:
GCTTCCTAGACT
Flanking Amino Acid:
VKRCTKPDRKEFQKIAMATA
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
57.6
46.8
Major BPS
61
0.27
1.1
67.3
35.2
Major PPT
88.6
0.87
0.7
83.9
31
Minor 5ss
29.5
-2.3
3.3
38.6
46.5
Minor BPS
66.4
0.6
1.7
79.87
42.4

Associated Gene:

Gene:
SEC61G
Ensembl Gene ID:
ENSAPLG00000002944
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002972
56926488 - 56927398
911