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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57045784_57053586_F

Intron Information:

Intron Rank:
131869
Intron Class:
major
Intron Phase:
Intron Coordinates:
57045784 - 57053586
Intron Length:
7803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTGGGTATG
5'SS Class:
major
3'SS Sequence:
TCTTTCCTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
TCTTTCCTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.5
0.32
1.1
63.5
42.3
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
81.5
0.71
0.8
77.5
29.8
Minor 5ss
35.1
-1.7
3.2
47.3
42.8
Minor BPS
69.7
0.61
1.6
79.54
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020770
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033681
57043347 - 57054336
10990