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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57045788_57053586_F

Intron Information:

Intron Rank:
131865
Intron Class:
major
Intron Phase:
Intron Coordinates:
57045788 - 57053586
Intron Length:
7799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTTAA
5'SS Class:
major
3'SS Sequence:
TCTTTCCTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
TCTTTCCTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
72.9
34.5
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
81.5
0.71
0.8
77.5
29.8
Minor 5ss
45.2
-0.5
2.5
48.8
47.3
Minor BPS
69.7
0.61
1.6
79.54
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020770
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024477
57045625 - 57058735
13111