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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57053820_57055772_F

Intron Information:

Intron Rank:
131866
Intron Class:
major
Intron Phase:
Intron Coordinates:
57053820 - 57055772
Intron Length:
1953

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CATCCCCTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
ATCCCCTTACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
28.5
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
76.6
0.6
0.8
68.8
31.3
Minor 5ss
34.5
-1.8
3.3
45.9
43.7
Minor BPS
50
-0.1
1.8
56.57
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020770
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024477
57045625 - 57058735
13111