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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57055925_57057873_F

Intron Information:

Intron Rank:
131867
Intron Class:
major
Intron Phase:
Intron Coordinates:
57055925 - 57057873
Intron Length:
1949

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAAATGC
5'SS Class:
major
3'SS Sequence:
AACACCCCTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
61.9
37.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
64.3
0.32
0.9
54.7
35.5
Minor 5ss
37.8
-1.4
3.2
47.6
43.3
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020770
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024477
57045625 - 57058735
13111