About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57195788_57196664_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57195788 - 57196664
Intron Length:
877

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TGTATTTCAATG
Flanking Amino Acid:
FGATCVRECPHNYVVTDHGS
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.3
77.7
33.5
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
91.6
0.94
0.7
84.6
36
Minor 5ss
41.9
-0.9
2.7
49.9
39.7
Minor BPS
49.9
-0.1
1.6
56.51
39.4

Associated Gene:

Gene:
EGFR
Ensembl Gene ID:
ENSAPLG00000002987
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028473
57164464 - 57200806
36343
ENSAPLT00000003154
57076769 - 57228374
151606