Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57198923_57199565_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

57198923 - 57199565

Intron Length:

643

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCA|GTAAGTAAA

5'SS Class:

major

3'SS Sequence:

TTCTCCATTTTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTAAC

U12 Branch Point Sequence:

TTTTCTCCATTT

Flanking Amino Acid:

LEIIRGRTKQHGQYSLAVVN

Intron Amino Acid Position:

436

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.4

0.67

77.3

32.8

Major BPS

76.8

0.67

0.9

75.9

Major PPT

80.1

0.68

0.7

78.3

28.8

Minor 5ss

37.2

-1.4

2.8

47.9

41.8

Minor BPS

48.8

-0

2.1

76.74

40.3

Associated Gene:

Gene:

EGFR

Ensembl Gene ID:

ENSAPLG00000002987

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028473

57164464 - 57200806

36343

ENSAPLT00000003154

57076769 - 57228374

151606