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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57202229_57204126_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57202229 - 57204126
Intron Length:
1898

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGGGCA
5'SS Class:
major
3'SS Sequence:
GGTTTCTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
GCATCACAAACA
Flanking Amino Acid:
TAYNATCTGPGPDHCMKCAH
Intron Amino Acid Position:
581

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68
0.43
1.1
60
38.9
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
79.4
0.66
0.9
70.1
41.4
Minor 5ss
32.4
-2
3.6
48.7
47
Minor BPS
43.8
-0.4
2.1
55.12
43

Associated Gene:

Gene:
EGFR
Ensembl Gene ID:
ENSAPLG00000002987
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003154
57076769 - 57228374
151606