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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57204285_57209868_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57204285 - 57209868
Intron Length:
5584

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
ATGTTTGTAACA
Flanking Amino Acid:
CQLCHPNCTRGCKGPGLEGC
Intron Amino Acid Position:
633

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
79.3
31.1
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
92.3
0.95
0.7
87.5
30
Minor 5ss
29.2
-2.4
2.5
25
36.8
Minor BPS
55.2
0.16
2
68.54
38.5

Associated Gene:

Gene:
EGFR
Ensembl Gene ID:
ENSAPLG00000002987
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003154
57076769 - 57228374
151606