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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57209905_57211356_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57209905 - 57211356
Intron Length:
1452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TATTGTGTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCACAT
U12 Branch Point Sequence:
CTTTCCACATCC
Flanking Amino Acid:
KGPGLEGCPNGSKIPSIAAG
Intron Amino Acid Position:
645

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
86.9
30.1
Major BPS
65.1
0.38
1.1
71.2
35.2
Major PPT
79.4
0.66
1
73.2
41.7
Minor 5ss
35.8
-1.6
2.9
43.1
43.9
Minor BPS
48.8
-0.1
2.1
67.7
43.6

Associated Gene:

Gene:
EGFR
Ensembl Gene ID:
ENSAPLG00000002987
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003154
57076769 - 57228374
151606