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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57211499_57213251_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57211499 - 57213251
Intron Length:
1753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTGTATGCACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TCCTTCTAAAGC
Flanking Amino Acid:
TLRRLLQERELVEPLTPSGE
Intron Amino Acid Position:
693

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
63.4
0.3
1.1
55.3
44.3
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
49.7
-0
2
60.68
45.3

Associated Gene:

Gene:
EGFR
Ensembl Gene ID:
ENSAPLG00000002987
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003154
57076769 - 57228374
151606