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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57222271_57223098_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57222271 - 57223098
Intron Length:
828

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACGC
5'SS Class:
major
3'SS Sequence:
CTTGTTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
AAATTTTGATCT
Flanking Amino Acid:
EKEYHAEGGKVPIKWMALES
Intron Amino Acid Position:
881

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
63.2
41.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
79.3
0.66
0.8
72.8
37.5
Minor 5ss
31.7
-2.1
3.2
42.6
44.3
Minor BPS
48.9
-0
1.6
65.01
39.3

Associated Gene:

Gene:
EGFR
Ensembl Gene ID:
ENSAPLG00000002987
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003154
57076769 - 57228374
151606