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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57223175_57224400_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57223175 - 57224400
Intron Length:
1226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTCAC
U12 Branch Point Sequence:
ACCTCTGTCACT
Flanking Amino Acid:
YTHQSDVWSYGVTVWELMTF
Intron Amino Acid Position:
906

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
75.8
35.2
Major BPS
62.6
0.31
1.2
66.7
39.9
Major PPT
83.8
0.76
0.7
77.9
23.9
Minor 5ss
32.5
-2
3
38
41
Minor BPS
46.2
-0.2
2.3
65.07
46.1

Associated Gene:

Gene:
EGFR
Ensembl Gene ID:
ENSAPLG00000002987
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003154
57076769 - 57228374
151606