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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57226693_57226839_F

Intron Information:

Intron Rank:
26
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
57226693 - 57226839
Intron Length:
147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
ACTCCCAACCTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
GTCTCTTCAATA
Flanking Amino Acid:
SATTCIDRNGQGHPVREDSF
Intron Amino Acid Position:
1060

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
67.1
44.6
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
57.3
0.16
0.9
48.4
33.6
Minor 5ss
31.6
-2.1
3.1
31.9
42.5
Minor BPS
61.8
0.37
1.5
67.99
39

Associated Gene:

Gene:
EGFR
Ensembl Gene ID:
ENSAPLG00000002987
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003154
57076769 - 57228374
151606