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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57226946_57227997_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57226946 - 57227997
Intron Length:
1052

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTAACTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CTGTTTTTAACT
Flanking Amino Acid:
SIDDGFLPAPEYVNQLMPKK
Intron Amino Acid Position:
1095

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.7
84
26.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
83.9
0.76
0.8
75.6
38.4
Minor 5ss
31.6
-2.1
2.6
37.4
40
Minor BPS
75.2
0.87
1.2
82.67
39.4

Associated Gene:

Gene:
EGFR
Ensembl Gene ID:
ENSAPLG00000002987
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003154
57076769 - 57228374
151606