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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57262394_57271234_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57262394 - 57271234
Intron Length:
8841

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCGG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTCAC
U12 Branch Point Sequence:
CCTGGCTCACTC
Flanking Amino Acid:
EPLPFGTDGKVSAQFTKRIQ
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
60.4
45.8
Major BPS
52.1
0.05
1.3
57
41.8
Major PPT
89.7
0.89
0.6
88.2
21.7
Minor 5ss
24.7
-2.9
3
29.5
43.3
Minor BPS
39.6
-0.8
2.1
45.19
44.3

Associated Gene:

Gene:
LANCL2
Ensembl Gene ID:
ENSAPLG00000003579
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003693
57262220 - 57289514
27295