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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57274376_57276488_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57274376 - 57276488
Intron Length:
2113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTGATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTCTATTTATCT
Flanking Amino Acid:
NDSESKECVTRLLQLQRTVT
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
81.3
32.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74.8
0.56
1
69.9
40.6
Minor 5ss
29
-2.4
3.2
40.6
45.6
Minor BPS
54.6
0.22
1.8
72.15
45.1

Associated Gene:

Gene:
LANCL2
Ensembl Gene ID:
ENSAPLG00000003579
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003693
57262220 - 57289514
27295