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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57276637_57277237_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57276637 - 57277237
Intron Length:
601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGACGC
5'SS Class:
major
3'SS Sequence:
TTTTCCTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAATCAA
U12 Branch Point Sequence:
TTTTCCTTCTTA
Flanking Amino Acid:
DTVPQSVIKEVIDAIIESGK
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
60.8
44.4
Major BPS
53.5
0.09
1.2
58
38.9
Major PPT
85.4
0.8
0.6
85.2
22.2
Minor 5ss
30.9
-2.2
3.3
42.1
44.7
Minor BPS
47.3
-0.2
3.6
78.93
38.2

Associated Gene:

Gene:
LANCL2
Ensembl Gene ID:
ENSAPLG00000003579
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003693
57262220 - 57289514
27295