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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57281258_57283305_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57281258 - 57283305
Intron Length:
2048

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAATCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTCCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTTAATTTATAT
Flanking Amino Acid:
VIHMLMQAYKTFKEDKYLKD
Intron Amino Acid Position:
327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
76.4
34.3
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
85.2
0.79
0.8
80.9
31.1
Minor 5ss
29.8
-2.3
3
40.4
45.7
Minor BPS
50.3
0.09
1.9
75.11
41.2

Associated Gene:

Gene:
LANCL2
Ensembl Gene ID:
ENSAPLG00000003579
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003693
57262220 - 57289514
27295