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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57283483_57286469_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57283483 - 57286469
Intron Length:
2987

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
ATGTCTTCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTAAAATAAAT
Flanking Amino Acid:
DKKYLYRACKFAEWCLEYGA
Intron Amino Acid Position:
386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.5
33.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
75.1
0.57
0.9
69.2
36.4
Minor 5ss
41
-1
3
56.7
47.6
Minor BPS
46.6
-0.1
2.1
74.15
41.3

Associated Gene:

Gene:
LANCL2
Ensembl Gene ID:
ENSAPLG00000003579
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003693
57262220 - 57289514
27295