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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57286543_57288362_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57286543 - 57288362
Intron Length:
1820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTGA
5'SS Class:
strong_major
3'SS Sequence:
CATTATATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATTATAT
Flanking Amino Acid:
IPDRPYSLFEGMAGAIHFLS
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.9
75.7
36.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
73.9
0.54
0.9
70.9
39.1
Minor 5ss
36.1
-1.6
3.3
47.1
48.3
Minor BPS
56.1
0.27
2
78.55
43.3

Associated Gene:

Gene:
LANCL2
Ensembl Gene ID:
ENSAPLG00000003579
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003693
57262220 - 57289514
27295