Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57298531_57302114_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

57298531 - 57302114

Intron Length:

3584

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCAGAGAC

5'SS Class:

major

3'SS Sequence:

TTCTTTCTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTGAC

U12 Branch Point Sequence:

TGCTGCTGACAC

Flanking Amino Acid:

YTRQPVNTASGSQQPGVPYY

Intron Amino Acid Position:

261

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.61

1.3

69.5

35.6

Major BPS

66.3

0.4

1.1

41.8

Major PPT

91.4

0.93

0.6

84.6

30.4

Minor 5ss

26.1

-2.7

3.1

32.7

42.3

Minor BPS

42.7

-0.5

2.1

53.08

44.1

Associated Gene:

Gene:

VOPP1

Ensembl Gene ID:

ENSAPLG00000018488

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029172

57298349 - 57357459

59111