Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57302252_57304380_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

57302252 - 57304380

Intron Length:

2129

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAGGTCAC

5'SS Class:

major

3'SS Sequence:

TCTCTTTTCCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAC

U12 Branch Point Sequence:

TGGGTTTTGACC

Flanking Amino Acid:

ALSIQRLWYFWFLLMMGVLF

Intron Amino Acid Position:

215

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.9

0.63

41.1

Major BPS

86.5

0.91

0.8

77.4

37.4

Major PPT

82.2

0.72

0.7

76.4

32.2

Minor 5ss

33.3

-1.9

3.2

40.4

40.2

Minor BPS

55.2

0.14

1.4

61.01

39.2

Associated Gene:

Gene:

VOPP1

Ensembl Gene ID:

ENSAPLG00000018488

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029172

57298349 - 57357459

59111